PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05233.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 162aa    MW: 17923.4 Da    PI: 10.3718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05233.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-182876355
                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +kG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  Rsa1.0_05233.1_g00002.1 28 FKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 76
                             8*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.4842784IPR001471AP2/ERF domain
SMARTSM003801.2E-362790IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-212885IPR016177DNA-binding domain
CDDcd000189.49E-262886No hitNo description
Gene3DG3DSA:3.30.730.101.4E-292885IPR001471AP2/ERF domain
PfamPF008471.2E-112876IPR001471AP2/ERF domain
PRINTSPR003672.3E-82839IPR001471AP2/ERF domain
PRINTSPR003672.3E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042742Biological Processdefense response to bacterium
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MLQHGAAAME AGVVAADVAG GRKRDRPFKG IRMRKWGKWV AEIREPNKRS RLWLGSYSTP  60
EAAARAYDTA VFYLRGPTAT LNFPELMQST ERSSVQDMSA AAIRKKATEV GAEVDAYGMA  120
VMNSKRRRVF GQKGDYAGGL LERVDLNKLP YPENQDNDVV GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-152891670ATERF1
3gcc_A1e-152891670ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600705.12e-99PREDICTED: ethylene-responsive transcription factor ERF011
SwissprotQ9SNE11e-82ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A078FXJ42e-99A0A078FXJ4_BRANA; BnaC08g21640D protein
TrEMBLA0A0D3DRV82e-99A0A0D3DRV8_BRAOL; Uncharacterized protein
STRINGBra036061.1-P3e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.17e-80cooperatively regulated by ethylene and jasmonate 1